API

Class Hierarchy

• • Namespace median
    • Struct vector_xy
    • Class beta_distribution
    • Template Class cube
    • Template Class cube_iterator_with_vector
  • Namespace utility
    • Namespace utility::umap_fits_file
      • Struct Cube
      • Struct Tile_Dim
      • Struct Tile_File
      • Class CfitsStoreFile
      • Class Tile
    • Struct umt_optstruct_t
  • Struct bfs_options
  • Struct rmat_option_t
  • Class rmat_edge_generator
    • Class rmat_edge_generator::input_iterator_type

File Hierarchy

• • Directory bfs
    • Directory generator
      • File generate_edge_list.cpp
      • File hash.hpp
      • File rmat_edge_generator.hpp
    • File bfs_kernel.hpp
    • File compute_degree_distribution.cpp
    • File ingest_edge_list.cpp
    • File README.md
    • File run_bfs.cpp
    • File test_bfs.cpp
  • Directory calculation
    • Directory program
      • File debug_median_calculation.cpp
    • File beta_distribution.hpp
    • File cube.hpp
    • File INSTRUCTION.md
    • File read_fits_file.py
    • File run_random_vector.cpp
    • File test_median_calculation.cpp
    • File torben.hpp
    • File utility.hpp
    • File vector.hpp
  • Directory umapcpu
    • File umapcpu.cpp
  • Directory umapsort
    • File umapsort.cpp
  • Directory utility
    • File bitmap.hpp
    • File commandline.hpp
    • File file.hpp
    • File mmap.hpp
    • File open_mp.hpp
    • File time.hpp
    • File umap_file.hpp
    • File umap_fits_file.hpp

Full API

Namespaces

• Namespace bfs
  • Functions
  • Variables

• Namespace median
  • Detailed Description
  • Classes
  • Functions

• Namespace read_fits_file
  • Functions

• Namespace rmat_edge_generator_detail
  • Functions

• Namespace std

• Namespace utility
  • Namespaces
  • Classes
  • Functions
  • Variables

• Namespace utility::umap_fits_file
  • Classes
  • Functions
  • Variables

Classes and Structs

• Struct bfs_options
  • Struct Documentation

• Struct vector_xy
  • Struct Documentation

• Struct rmat_option_t
  • Struct Documentation

• Struct Cube
  • Struct Documentation

• Struct Tile_Dim
  • Struct Documentation

• Struct Tile_File
  • Struct Documentation

• Struct umt_optstruct_t
  • Struct Documentation

• Class beta_distribution
  • Class Documentation

• Template Class cube
  • Class Documentation

• Template Class cube_iterator_with_vector
  • Class Documentation

• Class rmat_edge_generator
  • Nested Relationships
    • Nested Types
  • Class Documentation

• Class rmat_edge_generator::input_iterator_type
  • Nested Relationships
  • Inheritance Relationships
    • Base Type
  • Class Documentation

• Class CfitsStoreFile
  • Inheritance Relationships
    • Base Type
  • Class Documentation

• Class Tile
  • Class Documentation

Functions

• Function bfs::init_bfs
  • Function Documentation

• Function bfs::print_omp_configuration
  • Function Documentation

• Function bfs::run_bfs
  • Function Documentation

• Function calculate_median
  • Function Documentation

• Function calculate_umap_pagesize_aligned_graph_file_size
  • Function Documentation

• Function check_edge_list
  • Function Documentation

• Function count_level
  • Function Documentation

• Function cpu_setcpu
  • Function Documentation

• Function disp_bfs_options
  • Function Documentation

• Function disp_umap_env_variables
  • Function Documentation

• Function file_name
  • Function Documentation

• Function find_bfs_root
  • Function Documentation

• Function get_num_vectors
  • Function Documentation

• Function getns
  • Function Documentation

• Function ingest_edges
  • Function Documentation

• Function init_data
  • Function Documentation

• Function initdata(uint64_t *, int64_t)
  • Function Documentation

• Function initdata(uint64_t *, uint64_t)
  • Function Documentation

• Function main(int, char **)
  • Function Documentation

• Function main(int, char **)
  • Function Documentation

• Function main(int, char **)
  • Function Documentation

• Function main(int, char **)
  • Function Documentation

• Function main(int, char **)
  • Function Documentation

• Function main()
  • Function Documentation

• Function main(int, char **)
  • Function Documentation

• Function main(int, char **)
  • Function Documentation

• Function main(int, char **)
  • Function Documentation

• Function main(int, char **)
  • Function Documentation

• Function map_data
  • Function Documentation

• Function map_fits
  • Function Documentation

• Function map_graph(const bfs_options&)
  • Function Documentation

• Function map_graph(const size_t, const size_t, const std::string&)
  • Function Documentation

• Template Function median::is_nan
  • Function Documentation

• Template Function median::reverse_byte_order
  • Function Documentation

• Template Function median::torben
  • Function Documentation

• Function num_local_edges
  • Function Documentation

• Function num_threads
  • Function Documentation

• Function parse_options(int, char **, std::string&, std::vector<std::string>&)
  • Function Documentation

• Function parse_options(int, char **, rmat_option_t *, std::string *)
  • Function Documentation

• Function parse_options(int, char **, bfs_options&)
  • Function Documentation

• Function parse_options(int, char **, size_t&, size_t&, std::string&, std::string&)
  • Function Documentation

• Function print_context
  • Function Documentation

• Function print_num_page_faults
  • Function Documentation

• Function print_top_median
  • Function Documentation

• Function read_fits_file::main
  • Function Documentation

• Function read_fits_file::read_pixel
  • Function Documentation

• Function read_fits_file::read_timestamp
  • Function Documentation

• Function read_timestamp
  • Function Documentation

• Function rmat_edge_generator_detail::hash16
  • Function Documentation

• Function rmat_edge_generator_detail::hash32
  • Function Documentation

• Function rmat_edge_generator_detail::hash_nbits
  • Function Documentation

• Function rmat_edge_generator_detail::shifted_n_hash16
  • Function Documentation

• Function rmat_edge_generator_detail::shifted_n_hash32
  • Function Documentation

• Function shoot_vector
  • Function Documentation

• Function thread_num
  • Function Documentation

• Function usage
  • Function Documentation

• Function utility::bitmap_global_pos
  • Function Documentation

• Function utility::bitmap_local_pos
  • Function Documentation

• Function utility::bitmap_size
  • Function Documentation

• Function utility::create_file
  • Function Documentation

• Function utility::elapsed_time_sec()
  • Function Documentation

• Function utility::elapsed_time_sec(const std::chrono::high_resolution_clock::time_point&)
  • Function Documentation

• Function utility::extend_file_size(const int, const size_t)
  • Function Documentation

• Function utility::extend_file_size(const std::string&, const size_t)
  • Function Documentation

• Function utility::extend_file_size_manually
  • Function Documentation

• Function utility::get_bit
  • Function Documentation

• Function utility::get_file_size
  • Function Documentation

• Function utility::get_num_page_faults
  • Function Documentation

• Function utility::get_page_size
  • Function Documentation

• Function utility::get_umap_page_size
  • Function Documentation

• Function utility::map_file
  • Function Documentation

• Function utility::map_file_read_mode
  • Function Documentation

• Function utility::map_file_write_mode
  • Function Documentation

• Function utility::map_in_file(std::string, bool, bool, bool, uint64_t, void *)
  • Function Documentation

• Function utility::map_in_file(std::string, bool, bool, bool, uint64_t)
  • Function Documentation

• Function utility::msync
  • Function Documentation

• Function utility::munmap
  • Function Documentation

• Function utility::omp_schedule_kind_name
  • Function Documentation

• Function utility::set_bit
  • Function Documentation

• Function utility::umap_fits_file::operator<<
  • Function Documentation

• Function utility::umap_fits_file::PerFits_alloc_cube
  • Function Documentation

• Function utility::umap_fits_file::PerFits_free_cube
  • Function Documentation

• Function utility::umt_getoptions
  • Function Documentation

• Function utility::umt_getpagesize
  • Function Documentation

• Function utility::unmap_file
  • Function Documentation

• Function utility::usage
  • Function Documentation

• Function validate_level
  • Function Documentation

• Function validatedata
  • Function Documentation

Variables

• Variable bfs::k_infinite_level
  • Variable Documentation

• Variable correct_median
  • Variable Documentation

• Variable default_num_random_vector
  • Variable Documentation

• Variable num_vectors
  • Variable Documentation

• Variable size_k
  • Variable Documentation

• Variable size_x
  • Variable Documentation

• Variable size_y
  • Variable Documentation

• Variable sort_ascending
  • Variable Documentation

• Variable utility::BUFFERSIZE
  • Variable Documentation

• Variable utility::DIRNAME
  • Variable Documentation

• Variable utility::FILENAME
  • Variable Documentation

• Variable utility::NUMFILES
  • Variable Documentation

• Variable utility::NUMPAGES
  • Variable Documentation

• Variable utility::NUMTHREADS
  • Variable Documentation

• Variable utility::umap_fits_file::Cubes
  • Variable Documentation

• Variable x_intercept
  • Variable Documentation

• Variable x_slope
  • Variable Documentation

• Variable y_intercept
  • Variable Documentation

• Variable y_slope
  • Variable Documentation

Defines

• Define _GNU_SOURCE
  • Define Documentation

• Define _GNU_SOURCE
  • Define Documentation

• Define _GNU_SOURCE
  • Define Documentation

• Define _GNU_SOURCE
  • Define Documentation

• Define handle_error_en
  • Define Documentation

• Define MEDIAN_CALCULATION_COLUMN_MAJOR
  • Define Documentation

• Define MEDIAN_CALCULATION_VERBOSE_OUT_OF_RANGE
  • Define Documentation

Typedefs

• Typedef pixel_type
  • Typedef Documentation

• Typedef pixel_type
  • Typedef Documentation

• Typedef pixel_type
  • Typedef Documentation